Biomedical Informatics 713/Genetics 212, Fall 2010

Computational Statistics for Biomedical Sciences

Syllabus

Syllabus

Lecture notes

Acknowlegments: some of the materials were taken from HST190 (Rebecca Betensky and Yves Chretien) and BIO200/201 (Marcello Pagano and Kim Gauvreau) with their permissions.

Lecture 1 Notes

Lecture 2 Notes / Lab

Lecture 3 Notes

Lecture 4 Notes / (R console)

Lecture 5 Notes / (R console) / Lab

Lecture 6 Notes / Lab Data set 0 Data set 1 Data set 2 Data set 3 Data set 4

Lecture 7 Notes

Lecture 8 Notes

Lecture 9 Notes

Lecture 10 Notes

Homework assignments

Assignment 1 / Solutions

Assignment 2 / Solutions

Assignment 3 (dataset) / Solutions Part 1, Part 2

Assignment 4 (dataset) / Solutions

Assignment 5, part 2 (dataset - be sure to use Save target as...) / Solutions

Assignment 6 / Solutions

Assignment 7 / Solutions

Assignment 8


Helpful links:

R project: http://www.R-project.org
To download R: http://cran.r-project.org

Manuals: http://cran.r-project.org/other-docs.html
I would recommend "R for Beginners" by Emmanuel Paradis (PDF) from this page
"R reference card" by Tom Short is good too

Bioconductor project: http://www.bioconductor.org

Graphics:
A very comprehensive site:http://addictedtor.free.fr/graphiques
Simple graphics: http://www.harding.edu/fmccown/R/

To search mailing list archive: http://tolstoy.newcastle.edu.au/R