Pathway Analysis


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Documentation for package `sigPathway' version 1.1-0

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calcTNullFast Compute Null T Distribution for Each Gene
calcTStatFast Compute T-Statistics and Corresponding P-Values
calculate.GSEA Calculate 2-sided statistics based on the GSEA algorithm
calculate.NEk Calculate the NTk and NEk statistics
calculate.NTk Calculate the NTk and NEk statistics
G Collection of Human Pathways from Gene Ontology, BioCyc, BioCarta, KEGG, and SuperArray
GenesetsU133a Collection of Human Pathways from Gene Ontology, BioCyc, BioCarta, KEGG, and SuperArray
getPathwayStatistics Give the statistics for the probe sets in a pathway
index.DM Inflammatory Myopathy Dataset
index.IBM Inflammatory Myopathy Dataset
index.NORM Inflammatory Myopathy Dataset
MuscleData Inflammatory Myopathy Dataset
rankPathways Summarizes Top Pathways from Pathway Analyses
runSigPathway Perform pathway analysis
selectGeneSets Select gene sets to be analyzed in pathway analysis