calcTNullFast |
Compute Null T Distribution for Each Gene |
calcTStatFast |
Compute T-Statistics and Corresponding P-Values |
calculate.GSEA |
Calculate 2-sided statistics based on the GSEA algorithm |
calculate.NEk |
Calculate the NTk and NEk statistics |
calculate.NTk |
Calculate the NTk and NEk statistics |
G |
Collection of Human Pathways from Gene Ontology, BioCyc, BioCarta, KEGG, and SuperArray |
GenesetsU133a |
Collection of Human Pathways from Gene Ontology, BioCyc, BioCarta, KEGG, and SuperArray |
getPathwayStatistics |
Give the statistics for the probe sets in a pathway |
index.DM |
Inflammatory Myopathy Dataset |
index.IBM |
Inflammatory Myopathy Dataset |
index.NORM |
Inflammatory Myopathy Dataset |
MuscleData |
Inflammatory Myopathy Dataset |
rankPathways |
Summarizes Top Pathways from Pathway Analyses |
runSigPathway |
Perform pathway analysis |
selectGeneSets |
Select gene sets to be analyzed in pathway analysis |