GenesetsU133a {sigPathway}R Documentation

Collection of Human Pathways from Gene Ontology, BioCyc, BioCarta, KEGG, and SuperArray

Description

In this data set, the list G contain annotations for most human pathways as described in Gene Ontology, BioCyc, BioCarta, KEGG, and SuperArray. Each pathway in G contains the lookup ID (src), the Entrez Gene IDs (locusID), the pathway title (title), and the probe set IDs represented in the pathway (probes).

Usage

data(GenesetsU133a)

Format

A nested list

Source

http://www.chip.org/~ppark/PNAS05/

References

Tian L., Greenberg S.A., Kong S.W., Altschuler J., Kohane I.S., Park P.J. (2005) Discovering statistically significant pathways in expression profiling studies. Proceedings of the National Academy of Sciences of the USA, 102, 13544-9.

http://www.pnas.org/cgi/doi/10.1073/pnas.0506577102


[Package sigPathway version 1.1-3 Index]