Browsing chromatin state and ChIP-seq signals without IGV
Step 1: Open IGV and load ChIP-seq signal tracks
Alternatively, you need to load the ChIP-seq tracks from an IGV browser.
Signal tracks can be loaded here:
Please use mouse to right click on the "download here" link and click "Save Link As" to download the file.
Step 2: Load iHMM chromatin state tracks
Please use mouse to right click on each link and click "Save Link As" to download the BED file:
- Human H1-hESC:iHMM K=12, iHMM K=15, chromHMM K=15, Segway K=10, Segway K=15
- Human GM12878:iHMM K=12, iHMM K=15
- Fly EL:iHMM K=12, iHMM K=15
- Fly L3:iHMM K=12, iHMM K=15, chromHMM K=15, Segway K=10, Segway K=15
- Worm EE:iHMM K=12, iHMM K=15
- Worm L3:iHMM K=12, iHMM K=15, chromHMM K=15, Segway K=10, Segway K=15