The pages linked below show phylogenetic trees calculated using mouse embryonic cell (mES) data from Mikkelsen et al. (Nature. 2007 Aug 2;448(7153):553-60)
[H3K9me3] [H3K27me3] [H3K4me3] [H4K20me3] [H3K36me3] [RNA Pol II]
The pages linked below show trees derived using mES H3K9me3 enrichment for instances belonging to the same RepBase repeat type.
[MMVL30] [MMERGLN] [ORR1A1] [IAPEZ] [IAPEY3]