This tool aims to measure the enrichment of annotated repeat types in ChIP-seq data. A more detailed description of the method and an application to the repetitive elements associated with histone modifications in human and mouse cells can be found in the following paper.
Daniel S Day, Lovelace J Luquette, Peter J Park and Peter V Kharchenko. Estimating enrichment of repetitive elements from high-throughput sequence data. Genome Biology (In press). doi:10.1186/gb-2010-11-6-r69The tool is currently supplied with repeat assemblies for human, mouse and drosophila. More may be available in the future or on request. The assemblies can be downloaded here:
Download: Human hs36 (590MB) Mouse mm9 (539MB) Drosophila dm3 (40MB) Source code (at your own risk)
Please do not submit more than one analysis at a time.
If you are already registered, please enter your account information below:
View a demo of the tool
We have constructed a demo and tutorial to walk new users through a precomputed example analysis. During the demo, you may not upload or delete data or analyses--you will need to register a full account to analyze your data.
Create an account
If you have not yet registered for an account, feel free to try the demo. If you would like to register an account, please enter the following information (required fields are marked with a *):
|University, company, etc.|