Modfied:  December 5, 2005

Supplementary Material

Hamada FN*, Park PJ*, Gordadze PR & Kuroda MI, Genes & Development, 2005

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Affymetrix Raw Data

Each file is 12MB

Experiment RNAi GFP
1 RNAi_1 GFP_1
2 RNAi_2 GFP_2
3 RNAi_3 GFP_3

Excel table

Kuroda_MSL2_RNAi_Data.xls (4.6MB)

1ProbeAffymetrix Probe Identifier
2Transcript IDRepresentative Public ID (Affymetrix annotation)
3Chr LocationAlignment (Affymetirx annotation)
4Gene SymbolGene Symbol (Affymetrix annotation)
5FlybaseFlybase ID (Affymetrix annotation)
6-8Ratio-Exp1-3RNAi/GFP Ratio (log2 scale) Probe-level analysis for each experiment (computed using Comparative Analysis in Affymetrix GCOS)
9filter.passed=0 if filtered out because there are "Absent" calls on more than half of the arrays
10ratio.stable=0 if filtered out because the ratios in the 3 experiments are inconsistent (see Supplementary information below)
11-16GFP/RNAi_SignalSignal values computed by Affymetrix GCOS

Further annotations can be found from the Affymetrix website.

Supplementary information

More information can be found in this pdf file (7 pages, 550K)

Please direct your questions to Peter J. Park.