Supplement

Modfied: December 5, 2005

Supplementary Material >

Supplementary Material

Hamada FN*, Park PJ*, Gordadze PR & Kuroda MI, Genes & Development, 2005

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Each file is 12MB

Columns	Name	Explanation
1	Probe	Affymetrix Probe Identifier
2	Transcript ID	Representative Public ID (Affymetrix annotation)
3	Chr Location	Alignment (Affymetirx annotation)
4	Gene Symbol	Gene Symbol (Affymetrix annotation)
5	Flybase	Flybase ID (Affymetrix annotation)
6-8	Ratio-Exp1-3	RNAi/GFP Ratio (log2 scale) Probe-level analysis for each experiment (computed using Comparative Analysis in Affymetrix GCOS)
9	filter.passed	=0 if filtered out because there are "Absent" calls on more than half of the arrays
10	ratio.stable	=0 if filtered out because the ratios in the 3 experiments are inconsistent (see Supplementary information below)
11-16	GFP/RNAi_Signal	Signal values computed by Affymetrix GCOS

Further annotations can be found from the Affymetrix website.

More information can be found in this pdf file (7 pages, 550K)

Please direct your questions to Peter J. Park.